Dynamic time warping (DTW) is a fundamental technique in time series analysis for comparing one curve to another using a flexible time-warping function. However, it was designed to compare a single pair of curves. In many applications, such as in metabolomics and image series analysis, alignment is simultaneously needed for multiple pairs. Because the underlying warping functions are often related, independent application of DTW to each pair is a sub-optimal solution. Yet, it is largely unknown how to efficiently conduct a joint alignment with all warping functions simultaneously considered, since any given warping function is constrained by the others and dynamic programming cannot be applied.

Novel Markov Chain Monte Carlo (MCMC) methods have enabled the generation of large ensembles of redistricting plans through graph partitioning. However, existing algorithms such as Reversible Recombination (RevReCom) and Metropolized Forest Recombination (MFR) are constrained to sampling from distributions related to spanning trees. We introduce the marked edge walk (MEW), a novel MCMC algorithm for sampling from the space of graph partitions under a tunable distribution. The walk operates on the space of spanning trees with marked edges, allowing for calculable transition probabilities for use in the Metropolis-Hastings algorithm. Empirical results on real-world dual graphs show convergence under target distributions unrelated to spanning trees. For this reason, MEW represents an advancement in flexible ensemble generation. Introduction Recent advances in computational capabilities have greatly increased legislators' abilities to optimize political redistricting plans.

This paper explores the topological signatures of ReLU neural network activation patterns. We consider feedforward neural networks with ReLU activation functions and analyze the polytope decomposition of the feature space induced by the network. Mainly, we investigate how the Fiedler partition of the dual graph and show that it appears to correlate with the decision boundary -- in the case of binary classification. Additionally, we compute the homology of the cellular decomposition -- in a regression task -- to draw similar patterns in behavior between the training loss and polyhedral cell-count, as the model is trained.

We propose a method that combines the advantages of both types of approaches, while addressing their limitations: we extend a primal-dual framework drawn from the graph-neural-network literature to triangle meshes, and define convolutions on two types of graphs constructed from an input mesh. Our method takes features for both edges and faces of a 3D mesh as input, and dynamically aggregates them using an attention mechanism.

Technical quality: The discussion of the proofs in the paper is very brief, making the technical sections quite dense. The supplemental material fills in the details and the proofs appear to be correct. One issue that could be addressed more clearly in the paper and the supplemental is the need for infinite weight reverse edges in the dual graph. This is currently not explained at all in the main paper other than stating these edges are important and later empirically demonstrating that not including them leads to violations of DTW warping constraints. The hyper-parameter tuning section was very brief and the algorithm is not clear.

Retrosynthesis prediction focuses on identifying reactants capable of synthesizing a target product. Typically, the retrosynthesis prediction involves two phases: Reaction Center Identification and Reactant Generation. However, we argue that most existing methods suffer from two limitations in the two phases: (i) Existing models do not adequately capture the ``face'' information in molecular graphs for the reaction center identification. (ii) Current approaches for the reactant generation predominantly use sequence generation in a 2D space, which lacks versatility in generating reasonable distributions for completed reactive groups and overlooks molecules' inherent 3D properties. To overcome the above limitations, we propose GDiffRetro. For the reaction center identification, GDiffRetro uniquely integrates the original graph with its corresponding dual graph to represent molecular structures, which helps guide the model to focus more on the faces in the graph. For the reactant generation, GDiffRetro employs a conditional diffusion model in 3D to further transform the obtained synthon into a complete reactant. Our experimental findings reveal that GDiffRetro outperforms state-of-the-art semi-template models across various evaluative metrics.

Brain graph super-resolution (SR) is an under-explored yet highly relevant task in network neuroscience. It circumvents the need for costly and time-consuming medical imaging data collection, preparation, and processing. Current SR methods leverage graph neural networks (GNNs) thanks to their ability to natively handle graph-structured datasets. However, most GNNs perform node feature learning, which presents two significant limitations: (1) they require computationally expensive methods to learn complex node features capable of inferring connectivity strength or edge features, which do not scale to larger graphs; and (2) computations in the node space fail to adequately capture higher-order brain topologies such as cliques and hubs. However, numerous studies have shown that brain graph topology is crucial in identifying the onset and presence of various neurodegenerative disorders like Alzheimer and Parkinson. Motivated by these challenges and applications, we propose our STP-GSR framework. It is the first graph SR architecture to perform representation learning in higher-order topological space. Specifically, using the primal-dual graph formulation from graph theory, we develop an efficient mapping from the edge space of our low-resolution (LR) brain graphs to the node space of a high-resolution (HR) dual graph. This approach ensures that node-level computations on this dual graph correspond naturally to edge-level learning on our HR brain graphs, thereby enforcing strong topological consistency within our framework. Additionally, our framework is GNN layer agnostic and can easily learn from smaller, scalable GNNs, reducing computational requirements. We comprehensively benchmark our framework across seven key topological measures and observe that it significantly outperforms the previous state-of-the-art methods and baselines.

With the rapid development of the short video industry, traditional e-commerce has encountered a new paradigm, video-driven e-commerce, which leverages attractive videos for product showcases and provides both video and item services for users. Benefitting from the dynamic and visualized introduction of items,video-driven e-commerce has shown huge potential in stimulating consumer confidence and promoting sales. In this paper, we focus on the video retrieval task, facing the following challenges: (1) Howto handle the heterogeneities among users, items, and videos? (2)How to mine the complementarity between items and videos for better user understanding? In this paper, we first leverage the dual graph to model the co-existing of user-video and user-item interactions in video-driven e-commerce and innovatively reduce user preference understanding to a graph matching problem. To solve it, we further propose a novel bi-level Graph Matching Network(GMN), which mainly consists of node- and preference-level graph matching. Given a user, node-level graph matching aims to match videos and items, while preference-level graph matching aims to match multiple user preferences extracted from both videos and items. Then the proposed GMN can generate and improve user embedding by aggregating matched nodes or preferences from the dual graph in a bi-level manner. Comprehensive experiments show the superiority of the proposed GMN with significant improvements over state-of-the-art approaches (e.g., AUC+1.9% and CTR+7.15%). We have developed it on a well-known video-driven e-commerce platform, serving hundreds of millions of users every day

Dynamic time warping (DTW) is a fundamental technique in time series analysis for comparing one curve to another using a flexible time-warping function. However, it was designed to compare a single pair of curves. In many applications, such as in metabolomics and image series analysis, alignment is simultaneously needed for multiple pairs. Because the underlying warping functions are often related, independent application of DTW to each pair is a sub-optimal solution. Yet, it is largely unknown how to efficiently conduct a joint alignment with all warping functions simultaneously considered, since any given warping function is constrained by the others and dynamic programming cannot be applied.